Comparison_2Hamlet + Amoxicillin 2...1	Comparison_2Hamlet + Amoxicillin 2...2	Comparison_2Hamlet + Amoxicillin 2...3	Comparison_2Hamlet + Amoxicillin 2...4	Comparison_2Hamlet + Amoxicillin 2...5	Comparison_2Hamlet + Amoxicillin 2...6
1	Coefficients	Standard Errors	Test Statistics W	p Values	Adjusted p Values	Differential Abundance
Alistipes sp._MOT-127 (SP10) 	3.83079822254369	1.46320839715061	2.61808108127566	0.00884257913552324	0.857730176145754	FALSE
Turicimonas muris (SP11) 	3.7676623674953	0.93955043582014	4.01006930959112	6.07009271967786e-05	0.00685920477323598	TRUE
Bacteroides acidofaciens (SP19) 	0.368999508597134	1.77696408239842	0.207657269076077	0	0	TRUE
Bacteroides caecimuris (SP2) 	4.82288075746615	1.83935561870337	2.62204910699432	0.00874028361380123	0.85654779415252	FALSE
Blautia caecimuris (SP20) 	5.42877387057016	1.6084509368384	3.37515664683006	0	0	TRUE
Prevotella sp._MOT-128 (SP22) 	-1.65415090781959	1.72895015888754	-0.956737184884447	0.338699924456619	1	FALSE
Roseburia faecis (SP27) 	0.0893592259140816	1.52878299633797	0.058451216508904	0	0	TRUE
Flavonifractor plautii (SP28) 	4.01450789437484	1.94505433817221	2.06395668007266	0.0390218239032123	1	FALSE
Oscillospiraceae_[G-2] bacterium_MOT-149 (SP29) 	-1.55777979758448	1.33533641542158	-1.166582278139	0	0	TRUE
Lachnospiraceae_[G-14] bacterium_MOT-183 (SP3) 	0.0621125980820425	1.68319388021609	0.0369016301758823	0	0	TRUE
Robinsoniella peoriensis (SP30) 	4.07106269184001	1.86528894152569	2.1825373009021	0	0	TRUE
Eubacteriales_[G-1] bacterium_MOT-158 (SP38) 	-1.912382737704	1.46514211681417	-1.30525408815789	0	0	TRUE
Bacteroides stercorirosoris (SP4) 	-1.97561888608028	1.61888808816983	-1.2203554405751	0.222330161450781	1	FALSE
Clostridium tertium (SP44) 	3.8800358526692	1.93635631894634	2.00378195619518	0	0	TRUE
Muribaculum intestinale (SP5) 	6.30720300284183	1.95969545130528	3.21846080657116	0.00128880582777609	0.137902223572041	FALSE
Lachnospiraceae_[G-14] bacterium_MOT-184 (SP6) 	-1.76650668165722	1.41176681580435	-1.25127369611019	0	0	TRUE
Parabacteroides goldsteinii (SP8) 	2.66182892917005	0.819458869702204	3.24827642678073	0.00116106413375118	0.125394926445128	FALSE
Akkermansia muciniphila (SP9) 	-0.700407709363176	1.61184191774502	-0.43453871105614	0.663897290295346	1	FALSE
Prevotellamassilia timonensis_nov_92.641% (SPN1) 	3.59922135869506	1.20091582907374	2.9970638004423	0	0	TRUE
Oscillospiraceae_[G-3] bacterium_MOT-150_nov_90.745% (SPN101) 	0.293161658268691	1.36904545409566	0.214135810751691	0	0	TRUE
Anaerotruncus rubiinfantis_nov_92.760% (SPN103) 	-0.031105989110475	2.09875512469337	-0.0148211617184352	0	0	TRUE
Muribaculaceae_[G-2] bacterium_MOT-104_nov_91.991% (SPN104) 	-3.70264274558603	0.607994944735448	-6.08992357197498	0	0	TRUE
Alistipes putredinis_nov_95.887% (SPN106) 	-2.0695668462211	1.53814491676825	-1.34549535850588	0	0	TRUE
Oscillibacter valericigenes_nov_95.260% (SPN107) 	0.33436631025775	1.33696673933544	0.250093215051821	0	0	TRUE
Muribaculaceae_[G-1] bacterium_MOT-129_nov_91.522% (SPN110) 	4.53442463679206	2.11711875924184	2.14179040122241	0.0322103521895475	1	FALSE
Saccharofermentans acetigenes_nov_88.764% (SPN111) 	-0.0419177476948596	2.10747279236461	-0.019890054024293	0	0	TRUE
Lacrimispora indolis_nov_90.724% (SPN112) 	-0.39897498369786	2.45962211950097	-0.162209869774146	0.871140587777435	1	FALSE
Lawsonibacter asaccharolyticus_nov_97.973% (SPN114) 	0.113334698426568	1.50991023617449	0.0750605537410711	0	0	TRUE
Muribaculaceae_[G-2] bacterium_MOT-104_nov_90.870% (SPN116) 	0.214161462943479	1.4307680463734	0.149682866825492	0	0	TRUE
Muribaculaceae_[G-2] bacterium_MOT-104_nov_93.043% (SPN117) 	4.19122218231779	2.33005367520434	1.79876636616546	0.0720556457804582	1	FALSE
Alistipes putredinis_nov_95.879% (SPN119) 	-1.57598008681409	1.33427007730275	-1.18115523507801	0	0	TRUE
Odoribacter splanchnicus_nov_93.939% (SPN120) 	0.97864566608707	0.98541126712454	0.993134236167999	0	0	TRUE
Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.506% (SPN121) 	-4.10608404603983	0.486586434289492	-8.43855018694773	0	0	TRUE
Muribaculaceae_[G-2] bacterium_MOT-104_nov_90.022% (SPN127) 	2.35468883576045	2.54350631577828	0.925764886508625	0.354568178880008	1	FALSE
Faecalicatena orotica_nov_95.238% (SPN128) 	-2.11089076061298	1.55035024273692	-1.36155734518834	0	0	TRUE
Prevotellamassilia timonensis_nov_94.168% (SPN13) 	-0.456003771382375	2.21909658695384	-0.205490727200988	0.837188742142733	1	FALSE
Eisenbergiella massiliensis_nov_96.599% (SPN130) 	-3.3401609944073	0.557827331335077	-5.98780448138517	0	0	TRUE
Neglectibacter timonensis_nov_97.500% (SPN131) 	-1.66002492101661	1.40467710901837	-1.18178399175073	0	0	TRUE
Mailhella massiliensis_nov_92.094% (SPN132) 	-0.67537946437055	1.26893411210817	-0.532241554487408	0.594558705734965	1	FALSE
Anaerotruncus rubiinfantis_nov_92.517% (SPN133) 	2.04771696112719	1.8239905805444	1.12265764032401	0.261582924940725	1	FALSE
Lachnospiraceae_[G-11] bacterium_MOT-176_nov_95.946% (SPN136) 	3.94803020386091	1.47487637900387	2.67685499616409	0	0	TRUE
Eubacterium coprostanoligenes_nov_95.701% (SPN137) 	0.371441521961158	1.4415271663014	0.257672231675095	0	0	TRUE
Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.056% (SPN14) 	-2.13102765901046	1.57989941576983	-1.34883755113745	0	0	TRUE
Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.281% (SPN141) 	0.46408348779663	1.36998766218324	0.338750122068294	0	0	TRUE
Oscillospiraceae_[G-3] bacterium_MOT-150_nov_96.396% (SPN143) 	0.448282741498435	1.38215542860475	0.324335984376926	0	0	TRUE
Lachnospiraceae_[G-6] bacterium_MOT-171_nov_95.238% (SPN144) 	0.181629122334973	2.61636875652029	0.0694203070122787	0.944655065252759	1	FALSE
Muribaculaceae_[G-2] bacterium_MOT-104_nov_92.208% (SPN146) 	2.06941068707486	2.2655943622147	0.913407413784317	0.361028307839577	1	FALSE
Eubacteriales_[G-2] bacterium_MOT-162_nov_95.260% (SPN147) 	0.287397825898671	1.50680332789352	0.190733469045657	0	0	TRUE
Ruminococcus albus_nov_92.500% (SPN149) 	0.396899181556016	1.42182221219782	0.279148249444281	0	0	TRUE
Alistipes putredinis_nov_96.529% (SPN150) 	1.5227992804386	0.585822204792642	2.59942226153344	0.00933808264784291	0.887117851545076	FALSE
Rhodospirillum rubrum_nov_88.036% (SPN154) 	-2.44305292138922	0.508988277597646	-4.79982158512588	0	0	TRUE
Anaerotignum lactatifermentans_nov_97.523% (SPN157) 	-0.679428585759402	1.40561509683236	-0.483367450513683	0	0	TRUE
Phocea massiliensis_nov_95.682% (SPN158) 	-2.1463493048002	1.30918497442771	-1.63945458183894	0.101118622215953	1	FALSE
Oscillospiraceae_[G-2] bacterium_MOT-149_nov_96.171% (SPN159) 	3.88844470698442	1.42774919174018	2.72347883611481	0	0	TRUE
Harryflintia acetispora_nov_96.388% (SPN16) 	0.607428944076187	1.58623222767741	0.38293821893002	0	0	TRUE
Lachnospiraceae_[G-6] bacterium_MOT-171_nov_96.606% (SPN161) 	0.189131312491789	1.92140805718375	0.0984337042746677	0	0	TRUE
Muribaculum intestinale_nov_93.737% (SPN162) 	-0.811328492148393	1.52067448906074	-0.533531993851965	0.593665370000491	1	FALSE
Falcatimonas natans_nov_92.955% (SPN164) 	3.59638446213909	1.19871067659872	3.00021058654759	0	0	TRUE
Duncaniella freteri_nov_88.462% (SPN171) 	0.922960971199348	0.893365396821607	1.03312818526779	0	0	TRUE
Lachnoclostridium [Clostridium] populeti_nov_94.331% (SPN172) 	-4.84875413398767	0.574096135418691	-8.44589230765584	0	0	TRUE
Lachnospiraceae_[G-14] bacterium_MOT-184_nov_95.227% (SPN173) 	3.93487725828073	1.46446415934658	2.68690580999702	0	0	TRUE
Anaerotruncus rubiinfantis_nov_93.182% (SPN175) 	0.114466561426949	1.64204315908493	0.0697098372802444	0	0	TRUE
Lachnospiraceae_[G-12] bacterium_MOT-179_nov_94.796% (SPN182) 	0.208100689915749	1.43551431869748	0.144965945100827	0	0	TRUE
Muribaculaceae_[G-2] bacterium_MOT-104_nov_92.873% (SPN183) 	0.137950448410485	1.62361350781122	0.0849650780477033	0	0	TRUE
Gracilibacter thermotolerans_nov_88.315% (SPN192) 	2.20423546118621	1.55559201444568	1.41697529989679	0.156490149163607	1	FALSE
Lachnospiraceae_[G-11] bacterium_MOT-176_nov_97.297% (SPN193) 	-0.345641503284181	2.3527227473555	-0.146911277018377	0	0	TRUE
Oscillospiraceae_[G-2] bacterium_MOT-149_nov_93.919% (SPN195) 	0.574304786138452	1.15214835821084	0.498464266381707	0	0	TRUE
Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.291% (SPN197) 	0.685562512689134	1.20122148457931	0.570721154666352	0	0	TRUE
Acetatifactor muris_nov_92.551% (SPN2) 	-0.312070178083571	2.82479049800814	-0.110475512539292	0.912032269143913	1	FALSE
Alistipes sp._MOT-127_nov_91.775% (SPN200) 	3.29939348750914	0.971124820732185	3.39749681716666	0	0	TRUE
Clostridiales_[F-1][G-1] bacterium_HMT_093_nov_86.323% (SPN202) 	-1.00596549354304	1.59347704427152	-0.631302155973594	0	0	TRUE
Muribaculum intestinale_nov_92.688% (SPN212) 	3.6609355030736	1.76093622411124	2.07897109102932	0	0	TRUE
Algimonas porphyrae_nov_83.596% (SPN215) 	0.191980332684609	1.4481455676082	0.132569775427818	0	0	TRUE
Duncaniella freteri_nov_90.456% (SPN216) 	1.86815359041754	2.19700712417153	0.850317493222514	0.395148593429796	1	FALSE
Eubacteriales_[G-4] bacterium_MOT-164_nov_95.701% (SPN217) 	0.345515621613597	1.32830137468453	0.260118394965642	0	0	TRUE
Muribaculaceae_[G-2] bacterium_MOT-104_nov_93.261% (SPN222) 	0.386481667054648	1.29651887468867	0.298091816941311	0	0	TRUE
Eubacteriales_[G-4] bacterium_MOT-165_nov_95.918% (SPN225) 	0.413162569612494	1.27586966287846	0.323828194707888	0	0	TRUE
Lachnospiraceae_[G-9] bacterium_MOT-174_nov_96.136% (SPN226) 	-1.24727773253	1.21101201331177	-1.02994662218012	0	0	TRUE
Parabacteroides goldsteinii_nov_93.074% (SPN27) 	3.20349946335855	1.19227606081793	2.68687728340438	0	0	TRUE
Saccharofermentans acetigenes_nov_88.739% (SPN3) 	3.58478909011062	1.70015281104415	2.1085099332389	0	0	TRUE
Roseburia faecis_nov_97.964% (SPN38) 	0.229813790639403	1.55170892776138	0.148103672362671	0	0	TRUE
Duncaniella freteri_nov_93.103% (SPN49) 	5.06236995226755	2.29904862615221	2.20194122676742	0.0276694603349944	1	FALSE
Muribaculaceae_[G-2] bacterium_MOT-104_nov_93.074% (SPN60) 	1.37739721632175	1.94565745672936	0.7079340772744	0.478986196482268	1	FALSE
Muribaculaceae_[G-2] bacterium_MOT-104_nov_92.441% (SPN63) 	5.77141941168581	1.94929164861915	2.9607777860097	0	0	TRUE
Lachnospiraceae_[G-2] bacterium_MOT-167_nov_97.968% (SPN7) 	0.52421071845534	1.1904091169344	0.440361814268788	0	0	TRUE
Lacrimispora xylanolytica_nov_97.285% (SPN72) 	-2.04611247314001	1.54362531693559	-1.32552404439826	0.184997399946509	1	FALSE
Hydrogenoanaerobacterium saccharovorans_nov_93.636% (SPN74) 	4.00863867118874	1.52291931513822	2.63220686174364	0	0	TRUE
Culturomica massiliensis_nov_93.709% (SPN78) 	-1.0577028479641	1.20685706671366	-0.876411032537835	0	0	TRUE
Kineothrix alysoides_nov_95.928% (SPN79) 	-2.66023445540325	1.86318722090811	-1.42778698004737	0.153353181496679	1	FALSE
Gracilibacter thermotolerans_nov_87.668% (SPN8) 	3.29939348750914	0.971124820732185	3.39749681716666	0	0	TRUE
Lachnospiraceae_[G-10] bacterium_MOT-175_nov_96.372% (SPN80) 	-2.36965021617684	1.5309073443723	-1.54787304724078	0.12165286500783	1	FALSE
Muribaculaceae_[G-2] bacterium_MOT-104_nov_92.191% (SPN82) 	-2.27595332432995	1.61364722020534	-1.41044045800812	0	0	TRUE
Lachnospiraceae_[G-10] bacterium_MOT-175_nov_92.174% (SPN83) 	-0.386640522930702	1.90660852477144	-0.202789674916119	0	0	TRUE
Lachnoclostridium pacaense_nov_96.825% (SPN84) 	-0.430298915668989	2.42118625265869	-0.177722352089386	0	0	TRUE
Muribaculaceae_[G-2] bacterium_MOT-104_nov_89.462% (SPN85) 	-0.0145860921276544	1.74362860821011	-0.00836536637387907	0	0	TRUE
Eubacterium coprostanoligenes_nov_95.485% (SPN86) 	-0.00758466787081069	1.60527972509308	-0.00472482630425727	0	0	TRUE
Muribaculaceae_[G-2] bacterium_MOT-104_nov_91.974% (SPN87) 	-4.34589686037328	0.436572822011224	-9.95457490998271	0	0	TRUE
Lachnospiraceae_[G-12] bacterium_MOT-179_nov_92.534% (SPN88) 	1.55139683789981	2.54350542308686	0.609944379838201	0.541898652619239	1	FALSE
Lachnospiraceae_[G-14] bacterium_MOT-184_nov_94.989% (SPN89) 	0.0432751946609284	1.56511143397572	0.0276499127931103	0	0	TRUE
Eisenbergiella tayi_nov_94.318% (SPN9) 	0.544176765649029	1.17513576429825	0.463075656602104	0	0	TRUE
Pseudoflavonifractor capillosus_nov_95.721% (SPN90) 	0.29031507108598	2.33028976620251	0.124583249386656	0.9008534901217	1	FALSE
Anaerotignum lactatifermentans_nov_95.270% (SPN91) 	-0.0838473241821056	1.79834083983061	-0.0466248234622773	0	0	TRUE
Lachnospiraceae_[G-9] bacterium_MOT-174_nov_95.238% (SPN92) 	0.190552778753942	1.92026500955324	0.0992325422824192	0	0	TRUE
Alistipes timonensis_nov_97.831% (SPN94) 	-1.75573093677926	1.40444747163915	-1.25012218130887	0	0	TRUE
Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.946% (SPN95) 	-1.68983543648952	1.40735412639595	-1.20071800323417	0.229860608132016	1	FALSE
Oscillospiraceae_[G-4] bacterium_MOT-151_nov_91.723% (SPN98) 	0.141620210246608	1.62073524219427	0.0873802250729565	0	0	TRUE
Lachnospiraceae_[G-11] bacterium_MOT-177_nov_97.523% (SPN99) 	0.0237140273848986	1.58055153949014	0.015003640686433	0	0	TRUE
Bacteroides acidifaciens_acidofaciens (SPP3) 	-1.84156836050026	1.81760130889277	-1.01318608843987	0	0	TRUE
Lachnospiraceae_[G-12] bacterium_MOT-179_bacterium_MOT-180 (SPP4) 	-1.8909191584725	1.47727058432696	-1.28000867175867	0	0	TRUE
Blautia hansenii_hominis_marasmi (SPP5) 	3.90802431270831	1.73651013424062	2.25050475413281	0	0	TRUE
Alistipes multispecies_sppn12_2_nov_96.304% (SPPN12) 	5.9917507997266	1.55706954567037	3.84809452884582	0	0	TRUE
multigenus multispecies_sppn13_5_nov_94.570% (SPPN13) 	0.0739481609010129	1.67388348043326	0.0441776036178291	0	0	TRUE
multigenus multispecies_sppn14_2_nov_82.889% (SPPN14) 	4.03867477568879	1.5467647844442	2.61104649931632	0	0	TRUE
Eubacteriales_[G-1] multispecies_sppn15_2_nov_97.511% (SPPN15) 	-1.62633774186873	1.35423653443679	-1.20092590955324	0	0	TRUE
Bacteroidetes_[G-3] multispecies_sppn2_2_nov_87.554% (SPPN2) 	-2.05160016711387	1.52068968284275	-1.3491248018982	0	0	TRUE
multigenus multispecies_sppn22_2_nov_95.465% (SPPN22) 	0.415951986169332	1.27371325259058	0.326566427194925	0	0	TRUE
multigenus multispecies_sppn5_2_nov_97.279% (SPPN5) 	0.233034427609981	1.41599806141143	0.164572561192421	0	0	TRUE
Bacteroides multispecies_sppn6_2_nov_96.312% (SPPN6) 	4.32901924718755	1.72841867012201	2.50461263929877	0.0122585565407541	1	FALSE
multigenus multispecies_sppn7_2_nov_92.777% (SPPN7) 	-0.338144070725094	2.34666144182377	-0.144095805512659	0	0	TRUE
